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swalign 0.3.1

Smith-Waterman local aligner

swalign ===

This package implements a Smith-Waterman style local alignment algorithm. You can align a query sequence to a reference. The scoring functions can be based on a matrix, or simple identity. Weights can be adjusted for match/mismatch and gaps, with gap extention penalties. Additionally, the gap penalty can be subject to a decay to prioritize long gaps.

The input files are FASTA format sequences, or strings of sequences.

 
File Type Py Version Uploaded on Size
swalign-0.3.1.tar.gz (md5) Source 2013-02-20 5KB
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