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swalign 0.2

Smith-Waterman local aligner

Latest Version: 0.3.4

Localalign ===

This package implements a Smith-Waterman style local alignment algorithm. You can align a query sequence to a reference. The scoring functions can be based on a matrix, or simple identity. Weights can be adjusted for match/mismatch and gaps, with gap extention penalties. Additionally, the gap penalty can be subject to a decay to prioritize long gaps.

The input files are FASTA format sequences, or strings of sequences.

File Type Py Version Uploaded on Size
swalign-0.2.tar.gz (md5) Source 2012-10-30 4KB