wc-onto

Ontology for whole-cell modeling

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Project description

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Ontology for whole-cell modeling

Install this Python package with pip
```
pip install git+https://github.com/KarrLab/wc_onto.git#egg=wc_onto[all]
```
This command will install this Python package, including the ontology (in OBO format) and the Python code for using the ontology. Once installed, the ontology will be located at pkg_resources.resource_filename('wc_onto', 'onto.obo').
Obtain a BioPortal API key
Save your BioPortal API key to a configuration file (~/.wc/wc_onto.cfg)
```
[wc_onto]
    [[bioportal]]
        key = <BioPortal API key>
```
Import the package. The other ontologies which wc_onto references will automatically be downloaded the first time that the package is imported.
```
from wc_onto import onto
```

Alternatively, the ontology can be downloaded (in OBO format) from GitHub or BioPortal

The package is released under the MIT license.

This package was developed by the Karr Lab at the Icahn School of Medicine at Mount Sinai in New York, USA.

Please contact the Karr Lab with any questions or comments.

These details have not been verified by PyPI

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

This version

0.0.2

Mar 11, 2020

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Uploaded Mar 11, 2020 Source

Uploaded Mar 11, 2020 Python 2 Python 3

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