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xbob.optflow.liu 1.1.2

Python bindings to the optical flow framework by C. Liu

This package is a simple Boost.Python wrapper to the open-source Optical Flow estimator developed by C. Liu during his Ph.D. The code was originally conceived to operate over Matlab. This is a Python/Bob port. If you use this code, the author asks you to cite the following paper:

@thesis{Liu_PHD_2009,
  title = {{Beyond Pixels: Exploring New Representations and Applications for Motion Analysis}},
  author = {Liu, C.},
  institution = {{Massachusetts Institute of Technology}},
  year = {2009},
  type = {{Ph.D. Thesis}},
}

If you decide to use this port on your publication, we kindly ask you to cite Bob as well, as the base software framework, on which this port has been developed:

@inproceedings{Anjos_ACMMM_2012,
  author = {A. Anjos and L. El Shafey and R. Wallace and M. G\"unther and C. McCool and S. Marcel},
  title = {Bob: a free signal processing and machine learning toolbox for researchers},
  year = {2012},
  month = oct,
  booktitle = {20th ACM Conference on Multimedia Systems (ACMMM), Nara, Japan},
  publisher = {ACM Press},
  url = {http://publications.idiap.ch/downloads/papers/2012/Anjos_Bob_ACMMM12.pdf},
}

Here is a link to Liu's homepage with details on the code, also displaying the original Matlab port.

Installation

You can just add a dependence for xbob.optflow.liu on your setup.py to automatically download and have this package available at your satellite package. This works well if Bob is installed centrally at your machine.

Otherwise, you will need to tell buildout how to build the package locally and how to find Bob. For that, just add a recipe to your buildout that will fetch the package and compile it locally, setting the buildout variable prefixes to where Bob is installed (a build directory will also work). For example:

[buildout]
parts = xbob.optflow.liu <other parts here...>
prefixes = /Users/andre/work/bob/build/debug
...

[xbob.optflow.liu]
recipe = xbob.buildout:develop

...

Development

To develop these bindings, you will need the open-source library Bob installed somewhere. At least version 1.1.0 of Bob is required. If you have compiled Bob yourself and installed it on a non-standard location, you will need to note down the path leading to the root of that installation.

Just type:

$ python bootstrap.py
$ ./bin/buildout

If Bob is installed in a non-standard location, edit the file buildout.cfg to set the root to Bob's local installation path. Remember to use the same python interpreter that was used to compile Bob, then execute the same steps as above.

Usage

Pretty simple, just do something like:

import bob
from xbob.optflow.liu import cg_flow as flow
...
(u, v, warped) = flow(image1, image2)

The cg_flow method accepts more parameters. Please refer to its built-in documentation for details.

Reproducible Research Notes

Some notes on being able to reproduce consistent results through the different platforms supported by Bob.

Differences between Matlab and Bob/Python ports

I have detected inconsistencies between output produced by these pythonic bindings and Ce Liu's Matlab-based implementation. In all instances, these differences come from differences in either the gray-scaling conversion and/or the decompression routines for the test images and movies. Once a precise input is given in double-precision gray-scale, both bindings (ours and Ce Liu's Matlab ones) give out exactly the same output.

This means that you should expect precision problems if you feed in videos or lossy input formats such as JPEG images. If you input HDF5 files, Matlab .mat files or any other data in formats which are not subject to lossy compression/decompression, this data is pre-grayscaled and stored in double-precision floating point numbers, the output is consistently the same, no matter which environment you use.

If you input data which is not double-precision gray-scale, then it is (1) converted to double-precision representation and then (2) gray-scaled. These steps are taken in this order in both bindings. Depending on which you are using (Bob/Python versus Matlab), the results will be slightly different. This small differences in the input to the flow estimation engine will make Liu's framework give (hopefully slightly) different output. The outputs should be comparable though, but your mileage may vary.

New SOR-based Implementation

More recently (in August 2011), Ce Liu introduced a version of the Optical Flow framework using Successive Over-Relaxation (SOR) instead of Conjugate Gradient (CG) for minization. The new framework is presumably faster, but does not give similar results compared to the old CG-based one.

If you would like to give it a spin, use the method sor_flow instead of cg_flow as shown above. Notice that the defaults for both implementations are different, following the defaults pre-set in the Matlab MEX code in the different releases.

Particularly, avoid feeding colored images to sor_flow. While that works OK with cg_flow, sor_flow gives inconsistent results everytime it is run. I recommend gray-scaling images before using sor_flow. With that, results are at least consistent between runs. I'm not sure about their correctness. Ce Liu has been informed and should be working on it soon enough (today is 14.Nov.2012).

To access this implementation, use xbob.optflow.liu.sor_flow.

Access to the MATLAB code

Once you have installed the package, you will have access to a directory called matlab, which contains the code as it is/was distributed by Ce Liu, and a few Matlab routines that can be used to produce samples for testing. To use the Matlab code, you must:

$ # matlab/cg_based  => CG-based implementation
$ # matlab/sor_based => SOR-based implementation
$ cd matlab/cg_based/mex
$ mex Coarse2FineTwoFrames.cpp OpticalFlow.cpp GaussianPyramid.cpp
$ cd ..

At this point, the MEX is compiled and ready to be used. You will find 2 routines on the directory: flowimage and flowmovie. They can be used to process single images or movie files. They both produce HDF5 files that can be used as test input for this package's test suite, or for inspection (use h5dump to look into the file contents).

Here is an example of usage for the Matlab function flowimage:

$ matlab
...
>> flowimage ../../xbob/optflow/liu/data/gray table .

This will generate a file called table.hdf5 that contains the flow calculated for the table example, i.e. between images table1.png and table2.png. The input images are pre-gray-scaled and are taken from the directory ../../xbob/optflow/liu/data/gray, following your command.

You will find more examples on this directory and on the ../../xbob/optflow/liu/data/gray directory.

Note

The contents of the directory reference are downloaded automatically by buildout. You can find the URL of the package by looking inside the file buildout.cfg.

Note

The example images are coded in PNG format so that they don't suffer from compression/decompression problems and can be read the same way in any platform or implementation.

 
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