17 projects
gene-normalizer
VICC normalization routines for genes
civicpy
CIViC variant knowledgebase analysis toolkit.
ga4gh.vrs
"GA4GH Variation Representation Specification (VRS) reference implementation (https://github.com/ga4gh/vrs-python/)"
metakb
A search interface for cancer variant interpretations assembled by aggregating and harmonizing across multiple cancer variant interpretation knowledgebases.
variation-normalizer
VICC normalization routine for variations
ga4gh.gks.metaschema
GA4GH Genomic Knowledge Standards meta-schema tools
agct
Another Genome Conversion Tool: Python frontend to Rust chainfile crate
evidence-normalizer
VICC normalization routine for evidence
thera-py
VICC normalization routines for therapeutics
disease-normalizer
VICC normalization routines for diseases
ga4gh.vrsatile.pydantic
"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"
fusor
Provide computable object representation and validation for gene fusions
uta-tools
Service for querying the biocommons.uta database
variant-normalizer
VICC normalization routine for variants
civic2clinvar
extraction of CIViC variants into the clinvar submission format
deepsvr
Automated Somatic Variant Refinement by Deep Learning
convert-zero-one-based
Convert between zero and one based coordinate systems and vice versa