21 projects
starfile
Read and write STAR files as pandas DataFrames
napari-threedee
A suite of useful tools based on 3D interactivity in napari
morphosamplers
A library for sampling image data along morphological objects such as splines and surfaces.
mdocfile
SerialEM mdoc files as pandas dataframes.
imodmodel
IMOD model files as pandas DataFrames in Python.
yet-another-imod-wrapper
A simple API for automated tilt-series alignment using IMOD
napari-mrcfile-reader
Read MRC2014 files in napari using mrcfile.
fidder
U-Net for 2D fiducial segmentation in cryo-EM
torch-cubic-spline-grids
Cubic spline interpolation on multidimensional grids in PyTorch
torch-cubic-b-spline-grid
Cubic B-spline interpolation on multidimensional grids in PyTorch
mdocspoofer
spoof SerialEM mdoc files from images collected in Tomography v5 from ThermoFisher
segmentation-nets-in-pytorch
A collection of neural networks for 2D and 3D image segmentation in PyTorch
tiltstack
stack tilt images into tilt-series, keeping track of metadata
napari-tomoslice
A napari plugin for interacting with electron cryotomograms
napari-subboxer
A napari plugin for interacting with electron cryotomograms
mrchead
CLI tool for viewing mrc file headers
emanjson2imodxf
Convert tilt-series alignments from EMAN2 to IMOD format.
dynamo2m
Interface the cryo-EM packages warp, dynamo and M
pathlibls
Add convenience methods ls and listdir to Path objects
eulerangles
Simplify the handling of large sets of Euler angles in Python
dynamotable
Read and write table files from the Dynamo software package for subtomogram averaging as pandas dataframes
