10 projects
pegasuspy
Pegasus is a Python package for analyzing sc/snRNA-seq data of millions of cells
demuxEM
demuxEM is the demultiplexing module of Pegasus
pegasusio
Pegasusio is a Python package for reading / writing single-cell genomics data
harmony-pytorch
Pytorch implementation of Harmony algorithm on single-cell sequencing data integration
cirrocumulus
Bring your single-cell data to life
altocumulus
Command line utilities for workflows on Terra or Cromwell
forceatlas2-python
scRNA-Seq analysis tools that scale to millions of cells
scplot
Single cell plotting
MulticoreTSNE-modified
Forked from MulticoreTSNE (https://github.com/DmitryUlyanov/Multicore-TSNE). Fix a randomness error in tsne.cpp.
louvain-github
Forked from louvain-igraph (https://github.com/vtraag/louvain-igraph). Publish because its PyPI version is out-of-date, whereas our scCloud package depends on this github repo version. Will remove if a new release is published.