63 projects
spleenseg
A ChRIS DS plugin heavily hacked off project MONAI's spleen segmenation notebook
spleendata
A ChRIS FS plugin to download a set of spleen data
aiochris
ChRIS client built on aiohttp
chrs
CLI ChRIS client
python-runj
I just want to run a shell command from Python!
pfmongo
A mongodb (portable) "pf" client
pypx
PACS/ChRIS core tools and utils
chris-plugin
ChRIS plugin helper
mbox2m365
'Send a message stored within an mbox using m365 (Office365)'
mni2mz3
Brain imaging surface mesh file format converter
python-chrisclient
(Python) client for the ChRIS API
persair
A mongodb aware purple air client
pfdicom-tagExtract
Extract DICOM header info -- part of the pf* family.
pfdicom-tagSub
Process DICOM tags and performs substitutions -- part of the pf* family.
pfdo-mgz2image
Runs mgz2image on each nested dir of an inputdir
mgz2imgslices
(Python) utility to filter mgz volumes to per-voxel-value directories of jpg/png image slices
python-pfconclient
(Python) client for the Pfcon API
px-recount
storescp series file counter for pypx "RE" mode.
pftree
Utility to create dict representations of file system trees.
plugin2cube
A ChRIS helper app that registers a plugin to a CUBE instance
pfmisc
Misc utilities for FNNDSC python repos
pftag
A tag parser with optional functional support
pflog
A logger client that can speak to a pftel telemetry server
pftel-client
A client library for accessing pftel
pipeline2cube
A ChRIS helper app that registers pipelines to a CUBE instance
pybicpl
Python interface for basic MNI .obj file format. Supports read, write, and calculations on a vertex neighbor graph.
pycivet
Object-oriented CIVET bindings for Python
pfdo-run
Run arbitrary CLI on each nested dir of an inputdir
pfdo
Base machinery for using a pftree object to good purpose
pfdicom
Base module for parsing DICOM files in the pf* family.
pfdo-med2image
Runs med2image on each nested dir of an inputdir
unirep-analysis
An app to run UniRep analysis
caw
ChRIS client library
med2image
(Python) utility to convert medical images to jpg and png
pull-scp
This plugin application is used to recursively copy data from a remote host into an analysis root node.
pfstate
class-defintion stateful module
chrisapp
Superclass for Chris plugin apps
chrispile
Syntactic sugar for running ChRIS apps locally
pfurl
(Python) Path-File URL comms
mgz2imagetree
(Python) utility to filter mgz volumes to per-voxel-value directories of jpg/png image slices
pfcon
(Python) Process and File Controller
pfioh
Path-and-File-IO-over-HTTP
pman
(Python) Process Manager
pyimgconvert
(Python) utility which acts as a wrapper around the Linux CLI: convert
medcon
A ChRIS DS plugin that wraps around medcon and provides NifTI to DICOM conversion capability.
python-chrisstoreclient
(Python) client for the ChRIS store API
z2labelmap
Convert lh/rh z-score vector to FreeSurfer labelmap
pfdcm
Path and File DICOM
pfstorage
object storage interface
pfdicom-rev
Process DICOM trees and create JSON summares for the ReV viewer.
pfdicom-agesort
Process ChRIS trees of DICOM data and reorder by age.
freesurfer-pp-moc
A simple/dummy app that simulates a FreeSurfer run
mpcs
This app simulates an MPC compute call and creates a z-score file.
pacscopy
copy from (openstorage) to output directory
freesurfer-pp
A simple/dummy app that simulates a FreeSurfer run
mri10yr06mo01da-normal
An anonymized MRI exemplar
simpledsapp-moc
A simple DS type ChRIS application specifically created for the Massachusetts Open Cloud remote computing environment.
simplefsapp-moc
A demo/testing simplefsapp for the MOC compute environment.
simpledsapp
A simple/dummy ChRIS DS app
pfdicomtag
(Python) utility to extract meta data from trees of organized DICOM files.
pacsretrieve
Interact with a PACS through an intermediary service, "pfdcm" (not included).
pacsquery
Query a PACS through an intermediary service, "pfdcm" (not included).
dcmutils
A collection of DICOM related utilities
