34 projects
pydra-mrtrix3
pydra-mrtrix3 contains Pydra task specifications for MRtrix3 tools
fileformats-medimage-mrtrix3
Classes for representing different file formats in Python classes for use in type hinting in data workflows
fileformats-medimage-extras
Classes for representing different file formats in Python classes for use in type hinting in data workflows
fileformats-medimage
Classes for representing various medical imaging file formats in Python classes for use in type hinting in data workflows
fileformats-extras
Extra methods for accessing and manipulating the underlying data referenced by fileformats classes
fileformats
Classes for representing different file formats in Python classes for use in type hinting in data workflows
nipype2pydra
Tool for converting Nipype tasks and workflows into Pydra syntax
pydra-nipype1
Tools for importing nipype 1.x interfaces into Pydra
fileformats-medimage-afni-extras
Extensions to add functionality to tool-specific *fileformats* classes
fileformats-medimage-afni
Classes for representing different file formats in Python classes for use in type hinting in data workflows
pydra-afni
Pydra tasks package for afni
arcana
Abstraction of Repository-Centric ANAlysis (Arcana): A framework for analysing on file-based datasets "in-place" (i.e. without manual download)
fileformats-datascience
Classes for representing datascience file formats in Python classes for use in type hinting in data workflows
fileformats-medimage-mrtrix3-extras
Classes for representing different file formats in Python classes for use in type hinting in data workflows
xnat
An XNAT client that exposes the XNAT REST interface as python objects. Part of the interface is automatically generated based on the servers data model as defined by the xnat schema.
arcana-xnat
An extension of the Arcana framework to apply workflows and analyses on data stored within XNAT data repositories
xnat4tests
Creates basic XNAT instance for API tests
medimages4tests
Generates dummy medical image data with realistic headers to be used in image handling tests
pydra-fsl
Pydra tasks for FSL
fileformats-mrtrix3-extras
Classes for representing different file formats in Python classes for use in type hinting in data workflows
pydra-ants
Pydra tasks for ANTs
arcana-bids
An Arcana extension for interacting with Brain Imaging Structure (BIDS) datasets and associated "Apps"
fileformats-datascience-extras
Classes for representing different file formats in Python classes for use in type hinting in data workflows
pydra-dcm2niix
Provides a task interface for the popular dcm2niix DICOM to NIfTI converter
fileformats-testing
Dummy classes for testing the 'fileformats' package
xnatutils
A collection of scripts for downloading/uploading and listing data from XNAT repositories.
arcana-testing
Dummy classes for testing the Arcana framework
pydra-freesurfer
Pydra tasks for FreeSurfer
dds4xnat
Renames the scan type for MR sessions stored on XNAT using the DeepDicomSort algorithm
banana
Brain imAgiNg Analysis iN Arcana (Banana): brain imaging analysis workflows implemented in the Arcana framework (arcana.readthedocs.io)
nineml
A tool for reading, writing and generally working with 9ML objects and files.
ninemlcatalog
A collection of 9ML models and basic Python functions for accessing them
pype9
PYthon PipelinEs for 9ML (Pype9) is a collection of Python pipelines for simulating networks of neuron models described in 9ML with various simulator backends.
Diophantine
A python package for finding small solutions of systems of diophantine (integer algebra) equations
