23 projects
twill
A web browsing and testing language
sourmash
tools for comparing biological sequences with k-mer sketches
sourmash-plugin-branchwater
fast command-line extensions for sourmash
sourmash-plugin-containment-search
sourmash plugin for improved output of containment search for metagenomes
screed
a Python library for loading FASTA and FASTQ sequences
pyo3-branchwater
fast search and gather extensions for sourmash
sourmash-plugin-commonhash
sourmash plugin to calculate common hashes across multiple sketches.
sourmash-plugin-abundhist
sourmash plugin to calculate abundance profiles.
sourmash-mixers
this meta-package installs a collection of sourmash plugins!
sourmash-plugin-sketchall
sourmash plugin to sketch many sequence files
get-some-ncbi-genomes
download one or more NCBI genomes by accession
sourmash-plugin-venn
sourmash plugin to build venn diagrams.
genome-grist
tools to support genome and metagenome analysis
spacegraphcats
tools for biological assembly graph neighborhood analysis
ribbity
convert github issues into a mkdocs site
pinocchio
pinocchio plugins for the nose testing framework
bbhash
A Python wrapper for the BBHash Minimal Perfect Hash Function
khmer
khmer k-mer counting library
syrah
extract trusted k-mers from raw sequencing data
Oxli
buoy
figleaf
figleaf code coverage tool
session2
Persistent sessions for Quixote 2.x
