108 projects
snakedeploy
Deploy a snakemake pipeline from GitHub
flux-python
Python bindings for the flux resource manager API
kubescaler
Helper classes for scaling Kubernetes clusters
fluxterm
Terminal application to interact with Flux jobs, cheat sheets, code, and good fortune
oras
OCI Registry as Storage Python SDK
jobspec
Jobspec specification and translation layer for cluster work
rainbow-scheduler
Python gRPC functions for the Rainbow Scheduler
singularity-hpc
Local registry intended for HPC using containers and system modules.
fluxoperator
Python SDK for the Flux Operator
compspec-flux
Generate resource graphs using Flux
compspec
Compatibility specifications and models
compspec-ior
Compatibility specification and extractor plugin for IOR (I/O)
urlchecker
tool to collect and validate urls over static files (code and documentation)
flux-restful-client
Python functions and command line equivalent for interacting with Flux RESTful API.
scif
a filesystem organization for scientific software and metadata
django-river-ml
Online machine learning with river and Django.
spython
Command line python tool for working with singularity.
cloud-select-tool
Tool for calculating costs and needs between cloud and HPC.
rse
tools for assessment and categorization of research software
metricsoperator
Python helpers for the Metrics Operator
deid
best effort deidentify dicom with python and pydicom
flux-burst-local
A bursting plugin for Flux and Compute Engine on Google Cloud
flux-burst
Flux module that enables burstable plugins.
flux-burst-compute-engine
A bursting plugin for Flux and Compute Engine on Google Cloud
flux-burst-gke
A bursting plugin for Flux and GKE
flux-burst-eks
A bursting plugin for Flux and EKS
sregistry
Command line tool for working with container storage
tributors
give tribute to your repository contributors.
flux-metrics-api
Custom metrics exporter for Flux in Kubernetes
prometheus-flux
Export flux instance metrics to Prometheus
pipelib
A command line client and functions for collation.
flux-cloud
deploy workflows to the flux operator in the cloud! 📦️
playground-tutorials
the fun cloud wrapper 🍬️ to deploy tutorial containers! 📦️
license-updater
Update license years
pokemon
ascii database of pokemon... in Python!
pakages
GitHub packages package manager.
django-oci
Open Containers distribution API for Django
contributor-ci
automated tools to assess contributions.
citelang
Credit parser and markdown language for scientific software.
deid-data
data to support deid, best effort deidentify dicom with python and pydicom
action-updater
Update deprecated command, versions, and other for GitHub actions
tunel
commander and viewer to tunnel commands for HPC
expfactory
software to generate a reproducible container battery of experiments.
spliced
Emulate or predict splicing outcomes.
elfcall
generate callgraph data for ELF binaries
container-guts
Easily export container guts (executables on the path).
smeagle
Fact generation for elf binaries with debug
opencontainers
Python module for oci specifications
watchme
reproducible monitoring client with exporters
singularity-compose
simple orchestration for singularity containers
qme
job submission and dashboard library
cssclean
remove un-used css from a file
pytest-github-report
Generate a GitHub report using pytest in GitHub Workflows
ohno
A command line client, wrapper, and Python module for formatting errors.
riverapi
Python client for interacting with online-ml river server
usrse
Python client for programmatic access to usrse events
paks
Interactive container commands.
singularity-tunel
commander and viewer to tunnel commands for HPC
schemaorg
Python functions for applied use of schema.org
symbolator-python
Assess compatibility of two binaries based on symbols.
puzzles
solve puzzles with Python
snakeface
Snakemake Interface
caliper
Caliper is a tool for measuring and assessing change in packages.
stools
Command line tools for container quality assurance
rseng
criteria and taxonomy for research software engineering
avt
AVT is the automated version tester to build reproducible environments
contributions-django
A GitHub style contributions graph for Django
openbases
openbases python helper functions for https://openbases.github.io
gridtest
generate grid testing for Python modules and functions
cdb
container database (cdb) metadata generation tool.
helpme
command line client for helping you out.
griznog
Your own personal Griznog, wisdom on demand
sourcecred
Python implementation of sourcecred
dinolemma
Simulate evolution of dinosaurs and avocado trees
codeart
Data visualizations with your own code.
markovmeme
Command line tool for generating markov memes.
juliart
Command line tool for generating Julia Set graphics and animations
nushell
Python module to easily create nushell plugins
freegenes
Command line python tool for working with FreeGenes.
singularity
command line tools for visualization and analysis of singularity containers.
containertree
Generate container trees
cognitiveatlas
python wrapper for the cognitive atlas (cognitiveatlas.org) RESTful API
sif
python handle for reading sif images
penrose
python API client to interact with penrose component packages
repofish
Command line tool for working with container storage
openschemas
openschemas python helper functions for schemaorg schemas
whedon
whedon python helper functions for https://openbases.github.io
containershare
library for working with containers, eventually will be goLang
pybraincompare
meta analysis and comparison for neuroimaging in python
tensorbayes
Deep Variational Inference in TensorFlow
som
stanford open modules for python
cftw
containers for the win is a module for container competitions
brainart
make images out of brain imaging data
facepalm
Generate smiley confusion matrices
pyneurovault
python wrapper for NeuroVault api
oscookie
Cookie cutter for generating random operating systems and software
wordfish
Infrastructure for finding relationships between terms in corpus of interest.
containeye
general visualization and comparison metrics for containers
ohbm
python api wrapper for the ohbm conference.
nidmviewer
command line or server tool to view or compare nidm results.
svgtools
components from images and data for interactive visualizations
expanalysis
thesis
ttoz
Convert a whole brain T score map to a Z score map without loss of precision for strongly positive and negative values.
artbrain
embed images into brain imaging data
visci
visualization standard file structure for continuous integration
deepdive
Standardizing inputs, outputs, and processing steps of DeepDive for a cloud deployment/tool
