fhir2transmart 0.1.0

Installation

The package requires Python 3.6.

To install fhir2transmart, do:

pip install fhir2transmart

Or from source:

git clone https://github.com/thehyve/python_transmart_loader.git
cd python_transmart_loader
pip install .
cd examples/fhir2transmart
pip install .

Run tests (including coverage) with:

python setup.py test

Usage

Read input from a JSON file input.json and write the output in transmart-copy format to /path/to/output. The output directory should be empty of not existing (then it will be created).

python -m fhir2transmart.fhir2transmart input.json /path/to/output

Example data is available at MITRE SyntheticMass.

License

Copyright (c) 2019, The Hyve

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <https://www.gnu.org/licenses/>.