Downloads data and metadata from GEO and SRA and creates standard PEPs.
Project description
geofetch
is a command-line tool that downloads sequencing data and metadata from GEO and SRA and creates standard PEPs. geofetch
is hosted at pypi and documentation is hosted at geofetch.databio.org (source in the /docs folder).
You can convert the result of geofetch into unmapped bam
or fastq
files with the included sraconvert
command.
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