meld · PyPI

MELD

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Project links

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Development Status
- 4 - Beta
Environment
- Console
Framework
- Jupyter
Intended Audience
- Developers
- Science/Research
Natural Language
- English
Operating System
Programming Language
Topic
- Scientific/Engineering :: Bio-Informatics

Project description

Quantifying the effect of experimental perturbations in scRNA-seq data.

Quick Start - check out our guided tutorial in python.

For a more in depth explanation of MELD, read our manuscript on BioRxiv:

Enhancing experimental signals in single-cell RNA-sequencing data using graph signal processing. Daniel B Burkhardt, Jay S Stanley, Ana Luisa Perdigoto, Scott A Gigante, Kevan C Herold, Guy Wolf, Antonio Giraldez, David van Dijk, Smita Krishnaswamy. BioRxiv. doi:10.1101/532846.

Installation

pip install --user git+git://github.com/KrishnaswamyLab/MELD.git

Requirements

MELD requires Python >= 3.5. All other requirements are installed automatically by pip.

Usage example

import meld
import graphtools
G = graphtools.Graph(data, use_pygsp=True)
meld_score = meld.meld(label, G=G, beta=0.5)

Project details

These details have not been verified by PyPI

Project links

GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Development Status
- 4 - Beta
Environment
- Console
Framework
- Jupyter
Intended Audience
- Developers
- Science/Research
Natural Language
- English
Operating System
Programming Language
Topic
- Scientific/Engineering :: Bio-Informatics

Release history Release notifications | RSS feed

1.0.2

Jul 20, 2023

1.0.0

Dec 10, 2020

0.3.2

Sep 24, 2020

0.3.0

Aug 21, 2020

0.3.0a0 pre-release

Aug 10, 2020

0.2.4

Oct 8, 2019

0.2.3

Sep 16, 2019

This version

0.2.2a0 pre-release

Mar 30, 2019

0.0

Jan 29, 2019

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