msprime 1.3.3
pip install msprime
Released:
Simulate genealogical trees and genomic sequence data using population genetic models
Navigation
Unverified details
These details have not been verified by PyPIProject links
Meta
- License: GNU General Public License v3 or later (GPLv3+) (GNU GPLv3+)
- Author: Tskit Developers
- Tags coalescent simulation, population genetics, ms, tree sequence, tskit
- Requires: Python >=3.9
Classifiers
- Development Status
- Environment
- Intended Audience
- License
- Operating System
- Programming Language
- Topic
Project description
msprime 
msprime is a population genetics simulator
based on tskit. Msprime can simulate random
ancestral histories for a sample of individuals
(consistent with a given demographic model) under a
range of different models and evolutionary processes. Msprime can
also simulate mutations on a given ancestral
history (which can be produced by msprime or other programs
supporting tskit) under
a variety of genome sequence evolution models.
Please see the documentation for more details, including installation instructions.
Project details
Unverified details
These details have not been verified by PyPIProject links
Meta
- License: GNU General Public License v3 or later (GPLv3+) (GNU GPLv3+)
- Author: Tskit Developers
- Tags coalescent simulation, population genetics, ms, tree sequence, tskit
- Requires: Python >=3.9
Classifiers
- Development Status
- Environment
- Intended Audience
- License
- Operating System
- Programming Language
- Topic
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distributions
Uploaded
CPython 3.12
manylinux: glibc 2.17+ x86-64
Uploaded
CPython 3.12
macOS 14.0+ ARM64
Uploaded
CPython 3.12
macOS 11.0+ x86-64
Uploaded
CPython 3.11
manylinux: glibc 2.17+ x86-64
Uploaded
CPython 3.11
macOS 14.0+ ARM64
Uploaded
CPython 3.11
macOS 11.0+ x86-64
Uploaded
CPython 3.10
manylinux: glibc 2.17+ x86-64
Uploaded
CPython 3.10
macOS 14.0+ ARM64
Uploaded
CPython 3.10
macOS 11.0+ x86-64
Uploaded
CPython 3.9
manylinux: glibc 2.17+ x86-64
Uploaded
CPython 3.9
macOS 14.0+ ARM64
Uploaded
CPython 3.9
macOS 11.0+ x86-64
File details
Details for the file msprime-1.3.3.tar.gz.
File metadata
- Download URL: msprime-1.3.3.tar.gz
- Upload date:
- Size: 888.9 kB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.0 CPython/3.12.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | d8ae798076167f632b8fd7eccd5089faaa84c9034ca69422f886425f94a5b01b |
|
| MD5 | a811d509007cd9c3caecc09eb1aa4849 |
|
| BLAKE2b-256 | 708472a914d91c3e9cea91b8089ddc2a32cc9bdee50eda7e8900be6be70d1fdb |
File details
Details for the file msprime-1.3.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.
File metadata
- Download URL: msprime-1.3.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
- Upload date:
- Size: 5.7 MB
- Tags: CPython 3.12, manylinux: glibc 2.17+ x86-64
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.0 CPython/3.12.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 2b90effc7a773ab534bd23473c8b99d902daa583b49f971b0bfb03b52e2bec3c |
|
| MD5 | 482545c4cb89a3e7c77c7a0f9e58593e |
|
| BLAKE2b-256 | a199c98c11f80b40f343396a667e00c07145e0ea271186eea2b4ece1016b895b |
File details
Details for the file msprime-1.3.3-cp312-cp312-macosx_14_0_arm64.whl.
File metadata
- Download URL: msprime-1.3.3-cp312-cp312-macosx_14_0_arm64.whl
- Upload date:
- Size: 1.2 MB
- Tags: CPython 3.12, macOS 14.0+ ARM64
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.0 CPython/3.12.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 7d8f1eaa9aab5408dc9395b4ceada3b400b6de9c5998a0761bc7129532f7b0bd |
|
| MD5 | bf32017eb06c54fa31d9913ce7db5cc5 |
|
| BLAKE2b-256 | 47ca4723e58bb8501b3b2c2f67ee522db5b6d63862244b4fb6d392cac620ce18 |
File details
Details for the file msprime-1.3.3-cp312-cp312-macosx_11_0_x86_64.whl.
File metadata
- Download URL: msprime-1.3.3-cp312-cp312-macosx_11_0_x86_64.whl
- Upload date:
- Size: 388.0 kB
- Tags: CPython 3.12, macOS 11.0+ x86-64
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.0 CPython/3.12.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 53efb584b2687c1e6d4e7f28922a10b04478b57a381731afb6fafc3b8d842b56 |
|
| MD5 | 7e6e1d8b2aec0872e64fc767452e6482 |
|
| BLAKE2b-256 | a5b480bc4faa3a559cb256f33150894292a547fadeaa9d413be7374eb1b6997d |
File details
Details for the file msprime-1.3.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.
File metadata
- Download URL: msprime-1.3.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
- Upload date:
- Size: 5.7 MB
- Tags: CPython 3.11, manylinux: glibc 2.17+ x86-64
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.0 CPython/3.12.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | a3cdbf8d3d8839321425147d11e62f1275951fc4e13c652e4df1d82f7f8b5936 |
|
| MD5 | f41530ec8547327bf884860c0d23ea28 |
|
| BLAKE2b-256 | 788a8bf436f4d5714e7204f09c59b2d4f6ec87ff781f1f55dbdf3fc8687130e6 |
File details
Details for the file msprime-1.3.3-cp311-cp311-macosx_14_0_arm64.whl.
File metadata
- Download URL: msprime-1.3.3-cp311-cp311-macosx_14_0_arm64.whl
- Upload date:
- Size: 1.2 MB
- Tags: CPython 3.11, macOS 14.0+ ARM64
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.0 CPython/3.12.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 0de1d80770cc5cc5b9e1b7a6d6100b178f579096b1a1ebf1b61bdd5e4e759252 |
|
| MD5 | bf9916fcf7fe51d1da29137507455d53 |
|
| BLAKE2b-256 | 1516d6bc1851baa5e44984841d898920732884a040bbe78772678c4ee174d468 |
File details
Details for the file msprime-1.3.3-cp311-cp311-macosx_11_0_x86_64.whl.
File metadata
- Download URL: msprime-1.3.3-cp311-cp311-macosx_11_0_x86_64.whl
- Upload date:
- Size: 386.8 kB
- Tags: CPython 3.11, macOS 11.0+ x86-64
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.0 CPython/3.12.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | ec5982e92b2c26ebd772380fdf83c04daef90b1104367c658b81499fa28b2565 |
|
| MD5 | 5b4c545225c1b179a546ce6830497f89 |
|
| BLAKE2b-256 | ec3ca87f9ac6868546b9e8a4922628a02880f541d733c9265d9ba2a75434923e |
File details
Details for the file msprime-1.3.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.
File metadata
- Download URL: msprime-1.3.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
- Upload date:
- Size: 5.7 MB
- Tags: CPython 3.10, manylinux: glibc 2.17+ x86-64
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.0 CPython/3.12.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 95c4ede6e42f9f4abcafa07bdcee7ad43725b1990281b0a8358c7bb4c3df7dd5 |
|
| MD5 | 332b8883490d95f4f8453430f5156a13 |
|
| BLAKE2b-256 | 93f20b3301719150327dfee449b9cf92b00e8a050f829d188c7c1e82f0e9d458 |
File details
Details for the file msprime-1.3.3-cp310-cp310-macosx_14_0_arm64.whl.
File metadata
- Download URL: msprime-1.3.3-cp310-cp310-macosx_14_0_arm64.whl
- Upload date:
- Size: 1.2 MB
- Tags: CPython 3.10, macOS 14.0+ ARM64
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.0 CPython/3.12.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 537e5dc8c47365255d2dff2601a78ed35ff257a1d17c6e03b7c0de45ca1254a4 |
|
| MD5 | 0bc05f72208d114d1960878ca010c772 |
|
| BLAKE2b-256 | 1cee03f83047e12c4be6f7dac54b5424ef3021c49986ce83abb33440d0820dbf |
File details
Details for the file msprime-1.3.3-cp310-cp310-macosx_11_0_x86_64.whl.
File metadata
- Download URL: msprime-1.3.3-cp310-cp310-macosx_11_0_x86_64.whl
- Upload date:
- Size: 386.8 kB
- Tags: CPython 3.10, macOS 11.0+ x86-64
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.0 CPython/3.12.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | c075f9be6906542e17e5d9bc108c08d21e5b5379512f77931ceb7986d2f2acda |
|
| MD5 | dffc5c474732bacbee6825b93483b3ed |
|
| BLAKE2b-256 | fdbd6126533c5ec78f62c53da6b2d6964e29c6e17abe9abed0bddaa03b5476aa |
File details
Details for the file msprime-1.3.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.
File metadata
- Download URL: msprime-1.3.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
- Upload date:
- Size: 5.7 MB
- Tags: CPython 3.9, manylinux: glibc 2.17+ x86-64
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.0 CPython/3.12.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | a88d9ab5fe59beef256f7db60b8c29cc4ee6c0d1cf9f00f92284e012e679c340 |
|
| MD5 | ff4f3ed147473b91755b5529a9d93fe1 |
|
| BLAKE2b-256 | 1e9f1a8d2a87571fa8b2fdc0baa8f178ad4e1ec4cc1c1c55bb4e0d30ea3c03cd |
File details
Details for the file msprime-1.3.3-cp39-cp39-macosx_14_0_arm64.whl.
File metadata
- Download URL: msprime-1.3.3-cp39-cp39-macosx_14_0_arm64.whl
- Upload date:
- Size: 1.2 MB
- Tags: CPython 3.9, macOS 14.0+ ARM64
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.0 CPython/3.12.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | e4f0491312e59cbe041602e462d64c3979e743e4452345d954c9aa9e54378f6b |
|
| MD5 | 06bc20c4c23228b8d53eb088c2423df1 |
|
| BLAKE2b-256 | 8a20bc798708a803d52936c103b7b1fe1e2c093f621e952de39e531f66b2f9ac |
File details
Details for the file msprime-1.3.3-cp39-cp39-macosx_11_0_x86_64.whl.
File metadata
- Download URL: msprime-1.3.3-cp39-cp39-macosx_11_0_x86_64.whl
- Upload date:
- Size: 386.8 kB
- Tags: CPython 3.9, macOS 11.0+ x86-64
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.0 CPython/3.12.4
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 156ecdad1339c13563ab7de68d62a7727456f2011c5596d06188ac624d41a213 |
|
| MD5 | c76bce19af467e6000f3b1edef58c5f2 |
|
| BLAKE2b-256 | 87b9cdfb11cefb2b03b916f801116a2fdda3cdea22a7fdf5958782ea3b62b2cf |
