Biological Stochastic Simulation of Single Cell Reactions and Parameter Estimation.

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for ayush9pandey from gravatar.com ayush9pandey Avatar for murrayrm from gravatar.com murrayrm Avatar for WilliamIX from gravatar.com WilliamIX

Unverified details

These details have not been verified by PyPI
Project links
GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Meta

License: BSD License

Author: Anandh Swaminathan, William Poole, Ayush Pandey

Tags SBML, synthetic, biology, modeling, Chemical, Reaction, Network, CRN, simulator, stochastic, parameter, inference

Classifiers

Project description

Build Status

Bioscrape is a Chemical Reaction Network Simulator written in cython for speed and python compatability. It can be used for deterministic, stochastic, or single cell simulation and also has parameter inference capabilities.

To install Bioscrape, in your terminal run the command:

pip install bioscrape

Please note that Bioscrape is a cython extension module and requires a C++ compiler to be set up on your computer for installation. For more information, please visit https://github.com/biocircuits/bioscrape/wiki.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for ayush9pandey from gravatar.com ayush9pandey Avatar for murrayrm from gravatar.com murrayrm Avatar for WilliamIX from gravatar.com WilliamIX

Unverified details

These details have not been verified by PyPI
Project links
GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Meta

License: BSD License

Author: Anandh Swaminathan, William Poole, Ayush Pandey

Tags SBML, synthetic, biology, modeling, Chemical, Reaction, Network, CRN, simulator, stochastic, parameter, inference

Classifiers

Release history Release notifications | RSS feed

1.2.2

1.2.1

1.2.0

1.1.0

This version

1.0.4

1.0.3

1.0.2.2

1.0.2.1

1.0.2

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

bioscrape-1.0.4.tar.gz (553.9 kB view hashes)

Uploaded Source

Built Distribution

bioscrape-1.0.4-py3.9-win-amd64.egg (1.1 MB view hashes)

Uploaded Source

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page