GOFindBias 1.2.2b1

# GOFindBias: Analysis tool for finding bias in the GAF files. GOFindBias is developed to provide the user with some insightful statistics about the [GAF](http://www.geneontology.org/page/go-annotation-file-formats) file to determine if the conclusions on the gene ontology studies can be biased because of abstract terms or the high throughput experiments([1](http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003063)).

Statistics Provided by the tool are as follows: 1. Shannon’s equitability. 2. Top ‘n’ PubMed and GO terms. 3. t test to compare two different [GAF](http://www.geneontology.org/page/go-annotation-file-formats) files.

### Prerequisites: #### Required modules.

Modules are available in most GNU/Linux distributions, or from their respective websites.

• [Matplotib](https://matplotlib.org/)

• [Biopython](http://biopython.org/)

### Installation

Installing from source ` git clone https://github.com/Pranavkhade/GOFindBias cd GoFindBias python setup.py install `

Installing with pip ` pip install gofindbias ` OR ` pip install git+git://github.com/Pranavkhade/GOFindBias ` ### NOTE

If you are using Anaconda environment, make sure that the Python reads libraries from “~anaconda2/lib/python2.7/site-packages/lib”. You can also simply copy the files in that location to an appropriate path where other python libraries are readable (importable) by Python.