Generate reports from metagenomics data
Project description
MicroView
MicroView, a reporting tool for taxonomic classification
MicroView agreggates results from taxonomic classification tools, such as Kaiju and Kraken, building an interactive HTML report with insightful visualizations.
Quickstart
Install the package:
pip install microview
Go to your directory containing Kaiju/Kraken-style results and run:
microview -t .
Alternatively, if you have a CSV table defining result paths and contrasts, like this:
sample,group
result_1.tsv,group_one
result_2.tsv,group_two
...etc...
You can run MicroView like this:
microview -df contrast_table.csv -o report_with_table.html
Then, an HTML file named microview_report.html
-
or the name you defined with the -o
param -
should be available in your working directory,
try opening it with your browser!
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