Python tools for interacting with XML files associated with RECONSTRUCT
Project description
===========
PyRECONSTRUCT
===========
Date Created: 3/7/2013
Authors: Michael Musslewhite, Larry Lindsey
** THIS DISTRIBUTION IS STILL IN DEVELOPMENT, BUGS ARE LIKELY TO EXIST **
PyRECONSTRUCT provides easy access to XML files associated with the program RECONSTRUCT.
This package should also be used to develop scripts/programs for various tasks that use
these XML files. Included examples are mergeTool for merging multiple RECONSTRUCT series
and excelTool for pushing object data into an excel workbook (.xlsx).
---------------------------------------------------------------------------
INSTALLATION
---------------------------------------------------------------------------
PyRECONSTRUCT can be installed in multiple ways:
The easiest being through pip*:
pip install PyRECONSTRUCT
Alternatively (from parent folder):
python setup.py install
*this method can have problems. Specifically, prerequisite packages may not install correctly
on their own and will interrupt the PyRECONSTRUCT installation
These dependencies are required to run on a linux system (currently working to get functionality on Windows):
python-dev
python-setuptools
libgeos-dev
libblas-dev
liblapack-dev
libfreetype6-dev
libpng-dev
gfortran
libxml2-dev
libxslt-dev
cmake
libshiboken-dev
---------------------------------------------------------------------------
IMPORTING INTO PYTHON
---------------------------------------------------------------------------
PyRECONSTRUCT should be imported with the name 'pyrecon' (i.e. import pyrecon)
To import only the XML-parse portion of PyRECONSTRUCT:
from pyrecon.tools import classes
or
from pyrecon.tool.classes import *
---------------------------------------------------------------------------
----------------------------------------------------------------------------
More info on RECONSTRUCT can be found here:
http://synapses.clm.utexas.edu/tools/index.stm
PyRECONSTRUCT
===========
Date Created: 3/7/2013
Authors: Michael Musslewhite, Larry Lindsey
** THIS DISTRIBUTION IS STILL IN DEVELOPMENT, BUGS ARE LIKELY TO EXIST **
PyRECONSTRUCT provides easy access to XML files associated with the program RECONSTRUCT.
This package should also be used to develop scripts/programs for various tasks that use
these XML files. Included examples are mergeTool for merging multiple RECONSTRUCT series
and excelTool for pushing object data into an excel workbook (.xlsx).
---------------------------------------------------------------------------
INSTALLATION
---------------------------------------------------------------------------
PyRECONSTRUCT can be installed in multiple ways:
The easiest being through pip*:
pip install PyRECONSTRUCT
Alternatively (from parent folder):
python setup.py install
*this method can have problems. Specifically, prerequisite packages may not install correctly
on their own and will interrupt the PyRECONSTRUCT installation
These dependencies are required to run on a linux system (currently working to get functionality on Windows):
python-dev
python-setuptools
libgeos-dev
libblas-dev
liblapack-dev
libfreetype6-dev
libpng-dev
gfortran
libxml2-dev
libxslt-dev
cmake
libshiboken-dev
---------------------------------------------------------------------------
IMPORTING INTO PYTHON
---------------------------------------------------------------------------
PyRECONSTRUCT should be imported with the name 'pyrecon' (i.e. import pyrecon)
To import only the XML-parse portion of PyRECONSTRUCT:
from pyrecon.tools import classes
or
from pyrecon.tool.classes import *
---------------------------------------------------------------------------
----------------------------------------------------------------------------
More info on RECONSTRUCT can be found here:
http://synapses.clm.utexas.edu/tools/index.stm
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