Visualize, edit and write SBML files.
Project description
SBMLDiagrams
Introduction
SBMLDiagrams is a Python package to visualize networks embedded in SBML Level 3 models. If the SBML layout and render extension are used, the package will use this data to display the network. SBMLDiagrams can export PNG, JPG, PDF files. SBMLDiagrams can be used to add SBML layout and render to an existing valid SBML model which can be subsequently be exported.
We also have an interface of SBMLDiagrams to NetworkX to exploit the variety of layout algorithms as well as SBbadger which is a tool for generating realistic but random biochemical networks.
Note that the API is currently undergoing rapid changes to make the package easier to use. If you are using any of the code, please cite the PYPI web page (https://pypi.org/project/SBMLDiagrams/). Thanks.
Installation
pip install SBMLDiagrams
A Figure Example
Here is a figure example visualized by SBMLDiagrams below:
Its animation is also available at https://youtu.be/3pFvLbtRBnQ. Please see more figure examples in the documentation.
Documentation
Please see the documentation at https://sys-bio.github.io/SBMLDiagrams/ for details.
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