A serializable type schema for compositional systems biology
Project description
Bigraph-schema
Welcome to bigraph-schema – a library providing a serializable type schema for compositional systems biology
simulations. This library is an integral component of the broader Process Bigraph project, which seeks to create an
innovative framework for representing, simulating, and analyzing complex biological systems.
The goal of bigraph-schema is to support interoperability and extensibility across compositional modeling,
facilitating seamless integration with existing and future modeling platforms. This is achieved by establishing a
standardized and serializable schema for the complex, hierarchical, and multiscale nature of biological systems.
Installation
To install bigraph-schema, you can use pip:
pip install bigraph-schema
Getting Started
To get started with bigraph-schema, check out our resources:
- Type System Overview: A tutorial demonstrating the functionality of bigraph-schema's type system, "core".
- Bigraph Schema Basics Tutorial: A tutorial covering the essential aspects of the bigraph-schema library. This resource will guide you through the core concepts and methods, helping you to master the basic operations.
License
Bigraph-schema is open-source software released under the Apache 2 License.
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