A package for converting Wikipathways to BEL
Project description
This package converts WikiPathways to BEL. At the moment, the package parse, store, and export to a namespace all Homo sapiens pathways. Furthermore, a small wrapper around the database allows to explore through a Flask-admin interface the database and perform simple queries.
Installation
This code can be installed with pip3 install git+https://github.com/bio2bel/wikipathways.git
Citation
Slenter, D.N., et al WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research Nucleic Acids Research, (2017)doi.org/10.1093/nar/gkx1064
Kutmon, M., et al. WikiPathways: capturing the full diversity of pathway knowledge Nucl. Acids Res., 44, D488-D494 (2016) doi:10.1093/nar/gkv1024
Kelder, T., et al. WikiPathways: building research communities on biological pathways. Nucleic Acids Res. 2012 Jan;40(Database issue):D1301-7
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Source Distribution
Hashes for bio2bel_wikipathways-0.0.1.tar.gz
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | ba135a0516d17ba0f1463645ca2c0e3f8e449d863874eab5b39e1582355addb4 |
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| MD5 | 6204a862cd031bb7a3df2d00d3511b99 |
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| BLAKE2b-256 | e44e011bfb3cb886c555ab95d1f0242c1114d57ba313626795a1c01f6ea59cfa |
