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Project description
celldega
Installation
pip install celldega
Note on VIPS Installation
If running on a new Terra.bio workspace you will need to install vips in a startup script (e.g., startup_script.sh) with the following
#!/bin/bash
apt update
apt install -y libvips
apt install -y libvips-tools
apt install -y libvips-dev
Please see Terra.bio documentation for more information.
Development installation
Create a virtual environment and and install celldega in editable mode with the optional development dependencies:
python -m venv .venv
source .venv/bin/activate
pip install -e ".[dev]"
You then need to install the JavaScript dependencies and run the development server.
npm install
npm run dev
Open example.ipynb
in JupyterLab, VS Code, or your favorite editor
to start developing. Changes made in js/
will be reflected
in the notebook.
PyPI
Increment version in project.toml
and
$ hatch build
$ hatch publish
NPM
Increment version in package.json
and
$ npm build
$ npm publish
Project details
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