Pydra tasks for ANTs designed for Clinica
Project description
clinica-pydra-ants
Pydra tasks for ANTs designed for Clinica
Pydra is a dataflow engine which provides a set of lightweight abstractions for DAG construction, manipulation, and distributed execution.
ANTs is a toolbox for multi-variate image registration, segmentation and statistical analysis.
Clinica is a software platform for clinical neuroimaging studies.
Table of Contents
Available Tasks
- ApplyTransforms
- CreateJacobianDeterminantImage
- N4BiasFieldCorrection
- Registration, registration_syn, registration_syn_quick
Installation
pip install clinica-pydra-ants
A separate installation of ANTs is required to use this package.
An official conda package is available through conda-forge:
conda install -c conda-forge ants
Development
This project is managed with Hatch:
pipx install hatch
To run the test suite:
hatch run test
To fix linting issues:
hatch fmt
License
This project is distributed under the terms of the Apache License, Version 2.0.
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