Project description

pydra-fsl

Pydra tasks for FSL designed for Clinica.

Pydra is a dataflow engine which provides a set of lightweight abstractions for DAG construction, manipulation, and distributed execution.

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.

Module	Tasks
bet	BET, RobustFOV
eddy	Eddy, ApplyTopup, Topup
fast	FAST
flirt	FLIRT, ApplyXFM, ConcatXFM, ConvertXFM, InvertXFM, FixScaleSkew, Img2ImgCoord, Img2StdCoord, Std2ImgCoord
fnirt	FNIRT, FNIRTFileUtils, ApplyWarp, ConvertWarp, InvWarp
fugue	FUGUE, PrepareFieldmap, Prelude, SigLoss
maths	(experimental) Maths, Mul
susan	SUSAN
utils	ChFileType, FFT, Info, Interleave, Merge, Orient, Reorient2Std, ROI, SelectVols, Slice, SmoothFill, Split, SwapDim

pip install clinica-pydra-fsl

A separate installation of FSL is required to use this package. Please review the FSL installation instructions and licensing details.

This project is managed with Hatch:

pipx install hatch

To run the test suite:

hatch run test

To fix linting issues:

hatch fmt

This project is distributed under the terms of the Apache License, Version 2.0.

These details have not been verified by PyPI

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This version

0.1.0

Apr 30, 2024

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Uploaded Apr 30, 2024 Source

Uploaded Apr 30, 2024 Python 3

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