Create a coordinate system in rod-shaped cells.
Project description
Preliminary docs: https://colicoords.readthedocs.io/
Project Goals
ColiCoords is a python project for analysis of fluorescence microscopy data from rodlike cells. The project is aimed to be an open, well documented platform where users can easily share data through compact hdf5 files and analysis pipelines in the form of Jupyter notebooks.
Installation
ColiCoords is in its initial realease phase and will in time be distributed via conda/pip. For the moment, to install ColiCoords, a python 3.6 installation is required as well as dependencies listed in requirements.txt. Then download the latest release, and then to install:
python setup.py installAlthough ColiCoords features automated testing, there are likely to be bugs. Users are encouraged to report them via the Issues page on GitHub.
Contact: jhsmit@gmail.com
Examples
Several examples of ColiCoords usage can be found in the examples directory. More examples will be added in time.
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Source Distribution
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