cvu 0.1

Connectome Visualization Utility version 0.1
Author: Roan LaPlante

==COPYRIGHT INFORMATION==
This program strictly observes the tenets of fundamentalist Theravada Mahasi
style Buddhism. Any use of this program in violation of these aforementioned
tenets or in violation of the principles described in the Visuddhimagga Sutta is
strictly prohibited and punishable by extensive Mahayana style practice.

The author's interpretation of fundamentalist Theravadan doctrine is very
similar to the terms and principles articulated by the GPLv3, which is included with and applies to the entirety of this work.

==PACKAGES USED==
===required packages===
MNE Python -- used for extracting and displaying surfaces from freesurfer
annotations, and for circle-plot visualizations
matplotlib -- plotting library (included in EPD)
traits/traitsui -- traits object framework (included in EPD)
chaco -- interactive plotting library (included in EPD)
mayavi/mlab/tvtk -- interactive 3D visualization library (included in EPD)
getopt -- module to process command line arguments
numpy/scipy -- math library for python (included in EPD)

===optional packages===
METIS -- graph partitioning library
METIS (python) -- a python library wrapping METIS
networkx -- a graph theory module for python (included in EPD)
graph-tool -- a graph theory module for python. Not integrated as of now.

(If METIS and networkx are not installed the --use-metis flag will result in
errors when attempting to calculate modules. These errors are not fatal
but the --use-metis builtin modularity analysis will not work.
--use-spectral will still work.)