Enzyme Cost Minimization - a package for calculating the minimal enzyme cost of a metabolic pathway
Project description
enzyme-cost
===========
Kinetic modeling of pathway fluxes for estimating the specific cost in enzymes
for sustaining a given flux.
Based on the idea of taking a kinetic model, and assuming fluxes are fixed but
the enzyme and metabolite levels are variables. This way, we minimize the total
enzyme level to get the minimal enzyme cost needed to achieve a certain
pathway flux.
Dependencies:
- PyPI packages: `sudo pip install X`
- numpy
- scipy
- matplotlib
- optlang
- pandas
- sbtab
- equilibrator-api
Example
-------
Try running the example script:
```
python -m example.test
```
===========
Kinetic modeling of pathway fluxes for estimating the specific cost in enzymes
for sustaining a given flux.
Based on the idea of taking a kinetic model, and assuming fluxes are fixed but
the enzyme and metabolite levels are variables. This way, we minimize the total
enzyme level to get the minimal enzyme cost needed to achieve a certain
pathway flux.
Dependencies:
- PyPI packages: `sudo pip install X`
- numpy
- scipy
- matplotlib
- optlang
- pandas
- sbtab
- equilibrator-api
Example
-------
Try running the example script:
```
python -m example.test
```
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