Web application for exploration of large scale scRNA-seq datasets, upgraded to enable end-to-end interactive analysis.
Project description
For the Data Science team
This fork implements some of the key features that have been highly requested by the data science team at CZBiohub.
Features include:
- Hotkeys (SHIFT+? to see a tooltip describing all available hotkeys)
- End-to-end interactive analysis and reembedding, with new embeddings hierarchically organized.
- LIDAR graph interaction mode (the airplane) - Show an interactive tooltip describing the cells underneath your cursor. Very helpful for the color impaired or for large datasets with hundreds of labels.
- Sankey plots
- Leiden clustering
- Label fusion and deletion
- Interactive selection of data layer for expression visualization
Installation
The easiest way is to install from the precompiled pip distribution located in dist/.
Clone this repo, activate your virtual environment of choice (conda or venv, typically), and install with:
pip install excellxgene
Ping me on slack (@Alec) if you have any questions!
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excellxgene-1.0.3.tar.gz
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