FAstqc DAta PArser - A minimal parser to parse FastQC output data in Python
Project description
## Welcome to Fadapa FAstqc DAta PArser - The Easiest way to parse FastQC results.
[](http://travis-ci.org/fadapa/fadapa/) [](https://coveralls.io/r/fadapa/fadapa?branch=master) [](https://pypi.python.org/pypi/fadapa/) [](https://pypi.python.org/pypi/fadapa/)
## Installation
Recomended way to install is using pip
pip install fadapa
Alternatively you can install esay_install
easy_install fadapa
You can also install from Github source code.
cd git clone https://github.com/fadapa/fadapa.git cd fadapa python setup.py install
## Usage
# import fadapa from fadapa import Fadapa
#load file f = Fadapa(‘/path/to/fastqc_output_file.txt’)
#get file name print(f.file_name)
#get entire content print(f.content())
#get all module names and their status print(f.summary())
#get raw data of any module print(f.raw_module(‘module name’))
#get cleaned data of any module print(f.clean_data(‘module name’))
## Author
[Anand Reddy Pandikunta](http://www.avilpage.com)
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