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Sensing functional connectivity in the brain, in Python

Project description

PythonVersion PyPI Black license

functional-connectivity implements a set of tools to detect and sense changes in a functional network from spike counts

This is the software repository behind the paper:

  • Tzu-Chi Yen and Yi-Yun Ho, Mapping functional neuronal networks to behavioral states, in preparation (2024).

Read it on: arXiv or PRX Life.

  • For full documentation, please visit this site.
  • For general Q&A, ideas, or other things, please visit Discussions.
  • For software-related bugs, issues, or suggestions, please use Issues.

Installation

functional-connectivity is available on PyPi:

pip install functional-connectivity

The dependencies needed to interact with Dandi are not installed by default. You will need to run:

  • SOMETHING

Development

Remember that ./docs contains the documentation of this library. You would need AWS credentials to be able to execute ./docs/deploy.sh.

Acknowledgement

The functional-connectivity library is supported by The Kavli Foundation. The authors want to thank Rebecca Morrison and Stephen Becker (@stephenbeckr) for inspirations.

We also want to thank the authors in these software implementations:

License

functional-connectivity is open-source and licensed under the GNU Lesser General Public License v3.0.

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