Map gene ids using uniprot's website.
Project description
Tool for converting between various gene ids.
Installation
$ pip install gene_mapUsage
$ gene_map --help
Usage: gene_map [OPTIONS]
Map gene ids between various formats.
Options:
-i, --input TEXT If it exists, treated as file with newline-separated gene
ids. Otherwise treated as a gene id itself. [required]
--from TEXT Source ID type. [required]
--to TEXT Target ID type. [required]
-o, --output TEXT CSV-file to save result to.
--help Show this message and exit.Getting started
Inputs can be either gene ids or files containing whitespace-separated gene ids:
$ cat mygenes.txt
Q9UM73 P97793
Q17192
$ gene_map -i P13368 -i P20806 -i mygenes.txt --from ACC --to GENENAME
From,To
P13368,sev
P20806,sev
Q9UM73,ALK
P97793,Alk
Q17192,BBXA1Release history Release notifications | RSS feed
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gene_map-0.1.0.tar.gz
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