tools for accessing large amounts of genomic data
Project description
by Michael Hoffman <michael.hoffman at utoronto dot ca>
Description
Genomedata is both a format for efficient storage of multiple tracks of numeric data anchored to a genome and a python interface to genomic datasets. The file format allows fast random access to hundreds of gigabytes of data, while retaining a small disk space footprint. We have also developed utilities to load data into this format.
Specifically, the genomedata package provides access to genome-scale data, either using an HDF5 container or a bigWig file.
Please see the following URL (and linked documentation) for information, installation, and support: https://hoffmanlab.org/proj/genomedata/
Documentation
Live documentation based on this repository can be found on Read the Docs.
License
Genomedata is free software: you can redistribute it and/or modify it under the terms of version 2 of the GNU General Public License as published by the Free Software Foundation.
Genomedata is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for genomedata-1.7.1-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | f02bab929452f8e7eca7c2284a0dd6a936436ca79ec1ce9a188ad93e5b1cc600 |
|
MD5 | be7f3cd0028b81c3a5e56d8e9c61cf56 |
|
BLAKE2b-256 | 868d978aac04cc015d144c15972a6e975a4796fb5d240d5fc3fbb6578e0815e3 |