genotype provides an automated pipipeline for comparinggenotypes from different assays.

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for clingen from gravatar.com clingen Avatar for henriks from gravatar.com henriks Avatar for karlnyr from gravatar.com karlnyr

Unverified details

These details have not been verified by PyPI
Project links
GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Meta

License: MIT License (MIT)

Author: Robin Andeer

Tags genotype, development

Classifiers

Project description

Genotype

Build Status - Github Coverage Status GitHub issues-closed Average time to resolve an issue Percentage of issues still open CodeFactor Code style: black Manage SNP calling comparisons at Clinical Genomics. The package exposes a CLI and a bare bones web interface to visualize results stored in a SQLite database.

Install

$ conda install -c bioconda pysam pyyaml sqlalchemy flask
$ pip install genotype

Help?

Please check out the documentation

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for clingen from gravatar.com clingen Avatar for henriks from gravatar.com henriks Avatar for karlnyr from gravatar.com karlnyr

Unverified details

These details have not been verified by PyPI
Project links
GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Meta

License: MIT License (MIT)

Author: Robin Andeer

Tags genotype, development

Classifiers

Release history Release notifications | RSS feed

3.0.0

2.5.2

This version

2.5.1

2.5.0

2.2.1

2.2.0

2.1.0

2.0.1

2.0.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

genotype-2.5.1.tar.gz (113.2 kB view hashes)

Uploaded Source

Built Distribution

genotype-2.5.1-py3-none-any.whl (29.8 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page