Run Jupyter on Orchestra 2
Project description
Jupyter-O2 is a command-line tool that automatically runs Jupyter on Orchestra 2, an HPC cluster managed by the HMS Resesarch Computing group.
Installation
First, follow the O2 wiki’s procedure to set up Jupyter for your account on O2.
Next, install Jupyter-O2.
pip install jupyter-o2Then, generate the config file.
jupyter-o2 --generate-configFollow the printed path to jupyter-o2.cfg and edit according to its instructions, particularly the DEFAULT_USER and INIT_JUPYTER_COMMANDS fields.
For more info on setting up Jupyter and troubleshooting Jupyter-O2, see the jupyter-o2 tips.
Usage
jupyter-o2 [subcommand]Examples: jupyter-o2 notebook or jupyter-o2 lab (try JupyterLab!)
If Jupyter is installed on your machine, Jupyter-O2 can also be run as a Jupyter subcommand:
jupyter o2 labFor info on the Jupyter-O2 command-line options, use jupyter-o2 --help.
Requirements and compatibility
python 2.7 or 3.6+
pexpect 4.5+
POSIX: Jupyter-O2 has not been tested on Windows, but it may work with Cygwin.
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