Merge multiple GenBank files using a spacer sequence
Project description
A small script to turn a multiple GenBank records (either in multiple
files or a
single multi-record file) into a single record.
Sequences are merged by concatenating them in order, and putting a
spacer
sequence between them. Spacer sequence length can be given in kbp. It
is
possible to pick an all-N spacer, or using a spacer consisting of
all-frame stop
codons.
Installation
pip install merge-gbk-records
Alternatively, clone this repository from GitHub, then run (in a python virtual environment)
pip install .
If this fails on older versions of Python, try updating your pip tool first:
pip install --upgrade pip
and then rerun the merge-gbk-records install.
merge-gbk-records is only developed and tested on Python releases
still under active
support by the Python project. At the moment, this means versions 2.7,
3.3, 3.4, 3.5 and 3.6.
Specifically, no attempt at testing under Python versions older than
2.7 or 3.3 is being made.
Usage
License
All code is available under the Apache License version 2, see the
`LICENSE <LICENSE>`__ file for details.
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Source Distribution
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