Plot methylation data obtained from nanopolish
Project description
METHPLOTLIB
This script takes data from nanopolish as processed by calculate_methylation_frequency.py to generate a genome browser view on a window.
INSTALLATION
pip install methplotlib
USAGE
methylation_frequency_browser.py [-h] -m METHYLATION [METHYLATION ...]
-n NAMES [NAMES ...] -w WINDOW
[-g GTF]
optional arguments:
-h, --help show this help message and exit
-m, --methylation METHYLATION [METHYLATION ...]
output of calculate_methylation_frequency.py
-n, --names NAMES names of datasets in --methylation
-w, --window WINDOW window (region) to which the visualisation has to be restricted e.g. chr7:12345-23456
-g, --gtf GTF add annotation based on a gtf file matching to your
reference genome
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methplotlib-0.1.1.tar.gz
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