Automation software for the AICS Microscopes.
Project description
Microscope Automation
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Automation software for a variety of popular microscopes, such as Zeiss and 3i.
Installation
To install the ZIP Version:
-
Copy the zip from the
latest release <https://github.com/aics-int/microscope_automation/releases/>
_ -
For ZEN systems, run
Export_ZEN_COM_Objects.bat <https://github.com/aics-int/microscope_automation/blob/master/scripts/Export_ZEN_COM_Objects.bat>
_
a. You may have to run as an administrator for it to work properly.
- Run
microscope_automation.exe
from inside the unzipped folder.
You can also use PyPI as follows:
Stable Release: pip install microscope_automation
Development Head: pip install git+https://github.com/aics-int/microscope_automation.git
Complete installation instructions available here <https://aics-int.github.io/microscope_automation/installation.html/>
_.
Development
See CONTRIBUTING <https://github.com/aics-int/microscope_automation/blob/master/CONTRIBUTING.rst/>
_
for information related to developing the code.
The Four Commands You Need To Know
-
pip install -e .[dev]
This will install your package in editable mode with all the required development dependencies (i.e.
tox
). -
make build
This will run
tox
which will run all your tests in both Python 3.7 and Python 3.8 as well as linting your code. -
make clean
This will clean up various Python and build generated files so that you can ensure that you are working in a clean environment.
-
make docs
This will generate and launch a web browser to view the most up-to-date documentation for your Python package.
Legal Documents
LICENSE <https://github.com/aics-int/microscope_automation/blob/master/LICENSE.txt/>
_CONTRIBUTING <https://github.com/aics-int/microscope_automation/blob/master/CONTRIBUTING.rst/>
_
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