Numerical IMage Analyses.
Project description
A library and a cli to help image analysis based on scipy.ndimage and scikit-image.
Features
easy dark and flat correction
automatic cell segmentation
easy ratio analyses
Installation
$ pyenv virtualenv 3.6.13 nima-0.3.1-py36 $ poetry install $ pip install .
- Optionally:
$ python -m ipykernel install –user –name=”nima0.3.1”
# Jedi not working %config Completer.use_jedi = False for python >= 3.7 should not be needed because ipython >= 7.20 will be used.
Usage
To use nima in a project:
from nima import nima
See documentation.
Description
A longer description of your project goes here…
Note
poetry rocks? development my idea is to use global flake8 and black and no need to track linting and safety in poetry. KISS.
pyenv activate nima-… poetry install pre-commit install before next first commit: pre-commit run –all-files
pyenv activare nima-0.2 poetry install pip install . so it is not installed in development mode and this version will persist to updates.
todo
restore sane complexity value
CI and static typing
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