nisnap
Project description
nisnap
Create snapshots of segmentation maps produced by neuroimaging software.
Usage
From a Terminal:
nisnap c1.nii.gz c2.nii.gz c3.nii.gz --bg /tmp/test.nii.gz --opacity 30 -o /tmp/test.gif
From IPython/Jupyter Notebook:
import nisnap
nisnap.plot_segment(
Using XNAT
From a Terminal:
nisnap --config /home/grg/.xnat.cfg -e BBRC_E000
From IPython/Jupyter Notebook:
from nisnap import xnat
xnat.plot_segment(config='/home/grg/.xnat.cfg', experiment_id='BBRC_E000',
raw=True, opacity=30, axes=('A'), cut_coords=range(100,120,2), animated=True)
How to install
pip install nisnap
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Source Distribution
nisnap-0.1b0.tar.gz
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