Skip to main content

Schema resources for the National Microbiome Data Collaborative (NMDC)

Project description

National Microbiome Data Collaborative Schema

PyPI - License GitHub last commit GitHub issues GitHub closed issues GitHub pull requests

Deploy Documentation

This repository defines a linkml schema for managing metadata from the National Microbiome Data Collaborative (NMDC). The NMDC is a multi-organizational effort to integrate microbiome data across diverse areas in medicine, agriculture, bioenergy, and the environment. This integrated platform facilitates comprehensive discovery of and access to multidisciplinary microbiome data in order to unlock new possibilities with microbiome data science.

Tasks managed by the repository are:

  • Generating the schema
  • Converting the schema from it's native LinkML/YAML format into other artifacts
  • Deploying the schema as a PyPI package
  • Deploying the documentation

Background

The NMDC Introduction to metadata and ontologies primer provides some the context for this project.

See also these slides describing the schema.

Dependencies

In order to make new release of the schema, you must have the following installed on your sytem:

A Pipfile.lock is include in the repository, but you can rebuild the lock file by executing pipenv install -d.

Maintaining the Schema

See MAINTAINERS.md for instructions on maintaining and updating the schema.

NMDC metadata downloads

See https://github.com/microbiomedata/nmdc-runtime/#data-exports

Project details


Release history Release notifications | RSS feed

This version

2.3.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

nmdc_schema-2.3.0.tar.gz (166.3 kB view hashes)

Uploaded Source

Built Distribution

nmdc_schema-2.3.0-py3-none-any.whl (172.6 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page