Python-based tools and utilities for NUFEB simulations
Project description
Description
Python-based tools and utilities for NUFEB simulations
Getting Started
Install via pip:
pip install nufeb-tools
Generate NUFEB simulations from the CLI:
nufeb-seed
Remove old runs:
nufeb-clean
Get data from a simulation for analysis
from nufeb_tools import utils
x = utils.get_data(test=True)
Plot the overall growth
from nufeb_tools import plot
import matplotlib.pyplot as plt
f, ax = plt.subplots()
plot.overall_growth(x.biomass,ax=ax)
Plot colonies based on initial seed cells
from nufeb_tools import utils, plot
import matplotlib.pyplot as plt
x = utils.get_data(directory= r'D:\runs\Run_21_18_56_1_2021-07-12')
f,ax = plt.subplots()
plot.colony(x,35000,colors,ax=ax)
plt.show()
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
nufeb_tools-0.0.56.tar.gz
(29.4 MB
view hashes)
Built Distribution
Close
Hashes for nufeb_tools-0.0.56-py2.py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 8f26b149b8582fc6c5e465636e8d5e0f51426f09431cc7aeac26f3486bfaf69b |
|
MD5 | aaee5ea3e1f36066d544301119f9f568 |
|
BLAKE2b-256 | e987278c8a6eb2ffbece3dbd28099ecf918b68f27d8b253212f349928b762165 |