OMERO figure creation app
Project description
OMERO.figure
OMERO.web app for creating figures from images in OMERO.
For full details see http://figure.openmicroscopy.org
Requirements
OMERO 4.4.x or OMERO 5.x
Installation
Please see instructions at http://figure.openmicroscopy.org
Development
We use Grunt for various tools. See http://figure.openmicroscopy.org/2014/05/01/testing-with-jshint-jasmine-grunt.html for an introduction.
Install Node from https://nodejs.org, then:
$ cd figure $ npm install
Install Grunt CLI as described on http://gruntjs.com/using-the-cli.
To compile jst templates:
$ grunt jst
To concatenate js files into a single figure.js file that is used in the app:
$ grunt concat
During development, you’ll want to have both of these run whenever the relevant files are edited. This can be achieved with:
$ grunt watch
To update the demo figure app at http://figure.openmicroscopy.org/demo/ we have a grunt task that concats and moves js files into demo/. It also replaces Django template tags in index.html and various js code fragments with static app code. This is all handled by the grunt task:
$ grunt demo
This puts everything into the figure/demo/ directory. This can be tested locally via:
$ cd demo/ $ python -m SimpleHTTPServer
Go to http://localhost:8000/ to test it. To update the figure.openmicroscopy.org site:
Copy the demo directory and replace the demo directory in gh-pages-staging branch.
Commit changes and open PR against ome/gh-pages-staging as described https://github.com/ome/omero-figure/tree/gh-pages-staging
It is also possible to run the demo in docker without installing anything locally:
$ docker build -t figure-demo . $ docker run -ti --rm -p 8000:8000 figure-demo
If you are using docker-machine (e.g. on Mac OS X or Windows), you can find the URL of your demo with:
# get the ip address of your docker machine (named default) $ docker-machine ip default 192.168.99.100 # Now check the result in your browser at: http://192.168.99.100:8000/
License
OMERO.figure is released under the AGPL.
Copyright
2016, The Open Microscopy Environment
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