SBML2dae: a customizable SBML to Matlab parser

Description

onemodel-cli is a command-line interface for the functionality of OneModel.

Motivation

OneModel can be used as a stand-alone package within a Python project. However, for onemodel-cli streamlines using OneModel for an expert users and simplies integrating OneModel into pre-existing workflows.

How to setup

onemodel-cli can be installed from PyPI and is compatible with Python 3.7+ for Window, Mac and Linux.

The latest package can be installed with:

pip install onemodel-cli

Quick example

TODO

Citing

If you use onemodel-cli in your research, please use the following citations in your published works:

• Santos-Navarro, F. N., Navarro, J. L., Boada, Y., Vignoni, A., & Picó, J. (2022). "OneModel: an open-source SBML modeling tool focused on accessibility, simplicity, and modularity." DYCOPS.

• Santos-Navarro, F. N., Vignoni, A., & Picó, J. (2022). "Multi-scale host-aware modeling for analysis and tuning of synthetic gene circuits for bioproduction." PhD thesis.

License

Copyright 2022 Fernando N. Santos-Navarro, Jose Luis Herrero, Yadira Boada, Alejandro Vignoni, and Jesús Picó

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this software except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.