Python tool for interactive visualisation and analysis of tomography data.
Project description
PeepingTom
PeepingTom is a python tool enable easy interaction with cryo-ET and subtomogram averaging data. It leverages the fast, multi-dimensional napari viewer and the scientific python stack.
DISCLAIMER: this package is in early development phase. Expect frequent bugs and crashes. Feel free to report them on the issue tracker.
Installation
pip install peepingtom
Basic Usage
To look at some data:
import peepingtom as pt
p = pt.peep('path_to_data.star')
p = pt.peep('path_to.mrc')
p = pt.peep('path_to_dir', recursive=True, filters='filename_regex')
Tips
To navigate nested attributes in Peeper, you can use the convenient dot notation:
p.datablocks.depictor.layers.visible # visible status of all the napari layers
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