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Requires: Python >=3.7

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Project description

pyft: python bindings for fibertools-rs

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pyft provides a python API for the rust library fibertools-rs. The inspiration for this API is to make analysis in python easier and faster; therefore, only extraction of data from a fiberseq bam is supported and not writing.

Install

pip install pyft

Example

import pyft
bam_f = "../tests/data/center.bam"
fiberdata = pyft.FiberdataFetch(bam_f, "chr1", 0, 1000)
for fiber in fiberdata:
    # print some info about the fiber
    print(fiber)
    # print the fiber number of ccs passes
    print(fiber.ec)    
    # print the mps start positions
    print(fiber.msp.starts)

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Avatar for mrvollger from gravatar.com mrvollger

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Requires: Python >=3.7

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0.2.2

0.2.1

0.2.0

0.1.12

0.1.11

0.1.10

0.1.9

0.1.8

0.1.7

0.1.6

0.1.5

This version

0.1.4

0.1.3

0.1.2

0.1.1

0.1.0

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pyft-0.1.4.tar.gz (8.3 MB view hashes)

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pyft-0.1.4-cp310-cp310-macosx_10_7_x86_64.whl (1.5 MB view hashes)

Uploaded CPython 3.10 macOS 10.7+ x86-64

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