Time-evolution analysis of image intensity under specific mask geometries
Project description
roidynamics
Small Python package providing tools to analyze the dynamics of intensity in time-lapse microscopy images split into regions of specific geometries.
Installation
You can install this package directly using:
pip install roidynamics
Note: If you encounter errors when trying to use the ND2 format because of errors related to unusual ROIs (non-square), you can try to install an alternative version with:
pip install git+https://github.com/guiwitz/nd2reader.git@master#egg=nd2reader -U
Authors
This package has been created by Guillaume Witz, Data Science Lab, University of Bern in collaboration with Jakobus van Unen, Pertz lab, Institute of Cell Biology, University of Bern.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
roidynamics-0.2.0.tar.gz
(6.7 MB
view hashes)
Built Distribution
Close
Hashes for roidynamics-0.2.0-py3-none-any.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | ef73c6a23a6c214516abab4a8249510ba4be9dbe933a32491462a09a40e58471 |
|
| MD5 | 6ac5ee054934f23e0b7073386adedfe5 |
|
| BLAKE2b-256 | 8827cabd03a8937b95947bcc2091d13330b903d8597d3364c9d3e4bf7016def6 |
