NGS pipelines bootstrapper
Project description
NGS pipelines bootstrapper
Installation
You can install the latest stable version from PyPI
$ pip install solida
Prerequisites
To run Solida, you need Conda. To install it, see conda.io
Usage
To check version:
$ solida -v
To list all the pipelines enabled, digit
$ solida list
$ solida list --full
To check if both pipeline and profile are available, digit:
$ solida pipeline -l pipeline_label -p profile_label
Before to deploy a pipeline, you have to create a project profile:
$ solida pipeline -l pipeline_label -p profile_label --create-profile
Solida will create a yaml file named profile_label.yaml into ~/solida_profiles.
Edit the profile_label.yaml to match your environment settings.
After that, deploy the pipeline with:
$ solida pipeline -l pipeline_label -p profile_label --deploy
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