Python toolkit for analysis, visualization, and comparison of spike sorting output
Project description
SpikeInterface: a unified framework for spike sorting
Here the branch of the OLD API of spikeinterface when spikeinterface was a metapackage depending on
- spikeextractors: Data file I/O and probe handling.
- spiketoolkit: Toolkit for pre-processing, post-processing, validation, and automatic curation.
- spikesorters: Python wrappers to spike sorting algorithms.
- spikecomparison: Comparison of spike sorting output (with and without ground-truth).
- spikewidgets: Data visualization widgets.
Now spikeinterface since v0.9.0 is a one unique package.
You can still use this branch for old API
git clone https://github.com/SpikeInterface/spikeinterface.git
cd spikeinterface
git checkout 0.1X_old_api
python setup.py install (or develop)
Then you can install the latest releases of the spikeinterface packages:
pip install --upgrade spikeextractors spiketoolkit spikesorters spikecomparison spikewidgets
You can also install the five packages from sources (e.g. for spikeextractors):
git clone https://github.com/SpikeInterface/spikeextractors.git
cd spikeextractors
python setup.py install (or develop)
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