No project description provided
Project description
tiffslide: a drop-in replacement for openslide-python
Welcome to tiffslide :wave:, a tifffile
drop-in replacement for openslide-python.
tiffslide's goal is to provide an easy way to migrate existing code from an
openslide dependency to the excellently maintained tifffile module.
We strive to make your lives as easy as possible: If using tiffslide is
unintuitive to use, slow, or if it's drop-in behavior differs from what you expect,
it's a bug in tiffslide. Feel free to report any issues or feature requests in
the issue tracker!
Development happens on github :octocat:
Documentation
tiffslide's behavior aims to be identical to openslide-python where it makes sense. If you rely heavily on the internals of openslide, this is not the package you are looking for. In case we add more features, we will add documentation here.
import tiffslide as openslide
Development Installation
- Install conda and git
- Clone tiffslide
git clone https://github.com/bayer-science-for-a-better-life/tiffslide.git - Run
conda env create -f environment.yaml - Activate the environment
conda activate tiffslide
Note that in this environment tiffslide is already installed in development mode,
so go ahead and hack.
Contributing Guidelines
- Please follow pep-8 conventions but:
- We allow 120 character long lines (try anyway to keep them short)
- Please use numpy docstrings.
- When contributing code, please try to use Pull Requests.
- tests go hand in hand with modules on
testspackages at the same level. We usepytest.
You can setup your IDE to help you adhering to these guidelines.
(Santi is happy to help you setting up pycharm in 5 minutes)
Acknowledgements
Build with love by Andreas Poehlmann and Santi Villalba from the Machine Learning Research group at Bayer.
tiffslide: copyright 2020 Bayer AG, licensed under BSD
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
